Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNHKTKKLTVLAIMIALDVFLTPIFRIE---GMAFMSSVVNIIAGVIMGPIYALVMALVTAFIRILTQAGVASVAP-----LAILGAGPGAFLAGWLYQFYA--KDWMSWVGEFIGTGIIGALLSAPIMVWFWT-WTADGNHEVLAKASAAQSIFLFMPRFIGATIIGGVIALLLLQGLKRVPVFMTIQALFKGEKVK
3RLB Chain:A ((17-188))
----NVRLLTEIAFMAALAFIISLIPNTVYGWIIVEIACIPILLLSLRRGLTAGLVGGLIWGILSMITGHAY-ILSLSQAFLEYLVAPVSLGI-AGLFRQKTAPLKLAPVLLGT-FVAVLLKYFFHFIAGIIFWSQYAWK------GWGAVAYSLAVNGISGILTAIAAFVILIIFVKKFPKLFIHSNY----------
General information:
TITO was launched using:
RESULT:
Template:
3RLB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130982 for 1274 contacts (-102.8/contact) +
2D Compatibility (PS) -16303 + (NN) -1840 + (LL) 2000
1D Compatibility (HY) -12400 + (ID) 1300
Total energy: -160825.0 ( -126.24 by residue)
QMean score : 0.324
(partial model without unconserved sides chains):
PDB file :
Tito_3RLB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RLB-query.scw
PDB file :
Tito_Scwrl_3RLB.pdb
: