Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDAKFDFAKLLVYKAGQFIKSEMQNTFDVEEKSRFDDLVTSLDKKTQKLLIQEIIQHYPDDNILAEE---DDVRSPIAQGNVWVLDPIDGTVNFIVQKDNFAVMLAYYEEGVGQFGIIYDVMADILYSGGGHFDVYANDKKIVPFQECPLERCLL---------GVNSAMYAENDCGIAHLASETLGVRIYGGAGISMAKVMQGKLLAYFSY-IQPWDYAAAKIMGETLGFTLLTLDGEEPNY--------STRQKVMFLPKSKLNLIQSYLTKK
2CZH Chain:A ((31-287))
----FQAAVQLALRAGQIIRKALTEEK---------DLVTETDHLVEDLIISELRERFPSHRFIAEEAAASGAKCVLTHSPTWIIDPIDGTCNFVHRFPTVAVSIGFAVRQELEFGVIYHCTEERLYTGRRGRGAFCNGQRLRVSGETDLSKALVLTEIGPKRDPATLKLFLSNMERLLH--AKAHGVRVIGSSTLALCHLASGAADAYYQFGLHCWDLAAATVIIREAGGIVIDTSGGPLDLMACRVVAASTREMAMLIAQAL-----------
General information:
TITO was launched using:
RESULT:
Template:
2CZH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -155423 for 1846 contacts (-84.2/contact) +
2D Compatibility (PS) -24935 + (NN) -14604 + (LL) 2192
1D Compatibility (HY) -12800 + (ID) 3050
Total energy: -208620.0 ( -113.01 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_2CZH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CZH-query.scw
PDB file :
Tito_Scwrl_2CZH.pdb
: