Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLYVQLMVILTFSFAGEVLSTIFNLPVPGSIIGLILLFLALKYKIIRLRHIDAVGNFLLANMTILFLPPAVGLMEHFQDIKPYLFGIAIIILGALFLNILTIGLVSQWIKKRYEGDYPEIGGKNGNFNE
2L8S Chain:A ((8-32))
-----------------------------------------------------------------------------------PLWVILLSAFAGLLLLMLLILALWKIGFFKRPLKKKMEK--------
General information:
TITO was launched using:
RESULT:
Template:
2L8S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10577 for 101 contacts (-104.7/contact) +
2D Compatibility (PS) -2500 + (NN) -457 + (LL) 8392
1D Compatibility (HY) -3200 + (ID) 300
Total energy: -8642.0 ( -85.56 by residue)
QMean score : 0.237
(partial model without unconserved sides chains):
PDB file :
Tito_2L8S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2L8S-query.scw
PDB file :
Tito_Scwrl_2L8S.pdb
: