Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MITIDKILEILKNDHNFREILFHEHYYYNWTQNVTFNALSYDSRQISSDTLFFA-KGATFKKEYLDSAITAGLSFYVSEIDYGADIPVILVNDIKKAMSLISMSFYNNPQNKLKLLAFTGTKGKTTAAYFAYHMLKVNHRPAMLSTMNTTLDGKSFFKSHLTTPESLDLFRMMATAVENQMTHLVMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFFHKRLLMENSNAVVVNSQMDHFNIVKEQVEYIPHDFYGDYSENVITE--SQAFSFHVKGK-LENTYDIKLIGKFNQENAIAAGLACLRLGVSIEDIKNGIAQTTVP-GRMEVLTQTNGAKIFVD-YAHNGDSLKKLL---AVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQVILTADDPNFEDPLVISQEIASHINRPVTIIIDREEAIANASTLTNCKLDAIIIAGKGADAYQIIKGNRDNYSGDLEVAKKYLKR |
2AM2 Chain:A ((22-355)) | -------------------------------EDTQLEKAEFDSRLIGTGDLFVPLKGARDGHDFIETAFENGAAVTLSEKEV-SNHPYILVDDVLTAFQ--SLASYYLEKTTVDVFAVTGSNGKTTTKDMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLH--MPEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAH-LAFFKDRSEIAKGKMQ---IADGMASGSLLLAPADPIV----EDYLPIDKKVVR------FGQGAELEITDLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLEN---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2AM2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -125912 for 2598 contacts (-48.5/contact) +
2D Compatibility (PS) -33703 + (NN) 164 + (LL) 3548
1D Compatibility (HY) -12000 + (ID) 4250
Total energy: -172153.0 ( -66.26 by residue)
QMean score : 0.231
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