Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKLLYIFEKNIILRKILITFSLIIIFLLGRYVPIPGVLISAYKGQDNNFATLYSTVTGGNLSQVGVFSLGIGPMMTTMILLRLFT--------IGKYSSGVSQKVQQFRQNVVMLVIAIIQGLAIAISFQ---------YHNGFSLTKLLLATMILVTGAYIISWIGN-LNAEYGFGGMTILVVVGMLVGQFNNIPLIFELFQDG--YQLAIILFLLWTLVAMYLMITFERSEYRIPV--MRTSIHNRL--VDDAYMPIKVNASGGMAFMYVYTLLMFPQYIIILLRSIFPTNPDITSYNDYFSLSSIQGVVIYMILMLVLSVAFTFVNIDPTKISEAMRESGDFIPNYRPGKETQSYLSKICYLFGTFSGFFMAFLGGVPLLFALGNDDLRTVSSMTGIFMMITGMSFM-ILDEFQVIRIRKQYTSVFENEEN |
| 2AKI Chain:Y ((39-435)) | ---------------------------------------------------------------ISIFALGIMPYISASIIIQLLTVVHPTLAEIKKEGESGRRKISQYTRYGT-LVLAIFQSIGIATGLPNMPGMQGLVINPGFAF--YFTAVVSLVTGTMFLMWLGEQITERGIGNGISIIIFAGIVAGLPPAIAHTIEQARQGDLHFLVLLLVAVLVFAVTFFVVFVERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIPAIFASSIILFPATIASWFGGGTGWN-WLTTISLYLQPGQPLYVLLYASAIIFFCFFYTALVFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTRLTLVGALYITFICLIPEFM---RDAMKVPFYFGGTSLLIVVVVIMDFMAQVQTLMMSSQYESALKKA-- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2AKI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -4725096 for 46665 contacts (-101.3/contact) +
2D Compatibility (PS) -28267 + (NN) 29932 + (LL) 5800
1D Compatibility (HY) 4400 + (ID) 1050
Total energy: -4714281.0 ( -101.02 by residue)
QMean score : ?
|
|
|