Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MVFKDATAMAQAIKQHKVSSQELVEQAIYKIEEQNVSVNAVVSKQYNEARQAAKYANASNAPFAGVPILLKDLGQNQKGQLSTSGSQLFKHYYAKQTDYLVQSFEKLGFIILGRTNTPEFGFKNISDSQLHGNVNLPFDHSRNAGGSSGGAAAAVSSGMVPIAGASDGGGSIRIPASFNGLIGLKPSRGRIPVGPSSYRGWQGASSHFALTKSVRDTKRLLYYLQSYQVESPFPLKKLSKESLFEFSVSKPLKIAVLMDSPLKTKVSSEAKA--------AIKEAADFLSQKGNHLELVEQPLDGIHSMKTYCMMNSVETA---AMFDGIEKSLGRSMEFSDMELM---TWAMY--QSGQRVLAKDYSKLLDSWDQF------------AATMARFHENYDLILTAATNQPAPFHGQFDLDETLQKQLRHMREFSVSEQQDLIWKMFEDSMAWTPFTHQPNLTGQPSLAIPTHLTKEG-LPLGVQLTAAKGREDLLLAVAELFEKEKQFKGPVCH |
3KFU Chain:E ((10-456)) | ------------VARGEVSPLEVAQAYLKRVQELDPGLGAFLS--LNERLLEEAEAVDPGLPLAGLVVAVKD-NIATRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRV----SRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSLDLPPRFQEALEGPLP-------PLRLGVVREALAGNSPGVERALEEALKVFRELGLSVREVSWP-SLPQALAAYYILAPAEASSNLARYDG--TLYGRRAAGEEVEGMMEATRALFGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFRE-VDLLLLPTTPHPA---------------------FPFGARRDPLAMYREDL-----YTVGANLTGLPALSFPAGF--EGHLPVGLQLLAPWGEDERLLRAALAFEEATARAHLKAP |
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General information:
TITO was launched using:
| RESULT:
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Template: 3KFU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 3583 for 3918 contacts (0.9/contact) +
2D Compatibility (PS) -44869 + (NN) -21338 + (LL) 4844
1D Compatibility (HY) -20400 + (ID) 6650
Total energy: -84830.0 ( -21.65 by residue)
QMean score : 0.363
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