Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIEITWTVKYITEFIATAFLIILGNGAVANVDLKGTKGNN--------------SGWIIIAIGYGLGVMMPALMFGNVSGNHINPAFTLGLAFSGLFPWAHVGQYILAQILGAMFGQLVVVMVYQPYFVKTENPNHVLGSFSTISALDDGQKSSRKAAYINGFLNEFVGSFVLFFGALALTKNYFGVELVGKLVQAGYDQTTAATRISPYVTGSLAVAHLGIGFLVMTLVASLGGPTGPALNPARDLGPRIVHRLLPKQILGQAKEDSKWWYAWVPVLAPIVASILAVALFKLLYL |
2F2B Chain:A ((2-243)) | ---VSLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFI--------FLQCAG----IGA-ATVGGL-GATAPFPGISYWQAMLAEVVGTFLLMITIMGIA--------VDERAPKGF-------------------AGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDL--------WNYYSIYVIGPIVGAVLAALTYQYLTS |
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General information:
TITO was launched using:
| RESULT:
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Template: 2F2B.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -169169 for 2100 contacts (-80.6/contact) +
2D Compatibility (PS) -23566 + (NN) -6777 + (LL) 3536
1D Compatibility (HY) -24000 + (ID) 3750
Total energy: -223726.0 ( -106.54 by residue)
QMean score : 0.284
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