Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLVGKEIIEFSAQAYHDGKFITVTNEDVKGKWAVFCFYPADFSFVCPTELGDLQEQYETLKSLDVEVYSVSTDTHFVHKAWHDDSDVVGTITYPMIGDPSHLISQGFDVLGQD-GLAQRGTFIIDPDGVIQMMEINADGIGRDASTLIDKVRAAQYIRQHPGEVCPAKWKEGAETLTPSLDLVGKI
1N8J Chain:A ((1-186))
-SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATLAPSLDLVGKI
General information:
TITO was launched using:
RESULT:
Template:
1N8J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105563 for 1406 contacts (-75.1/contact) +
2D Compatibility (PS) -20158 + (NN) -8304 + (LL) 208
1D Compatibility (HY) -20000 + (ID) 5550
Total energy: -159367.0 ( -113.35 by residue)
QMean score : 0.570
(partial model without unconserved sides chains):
PDB file :
Tito_1N8J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N8J-query.scw
PDB file :
Tito_Scwrl_1N8J.pdb
: