Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMRHVLIAVILFFLSIGLSAGCAEAGNKTQNQSATEVNASPLQPAEYFIYHNLMN-DKGLIKTDFSDQ--------PSYLSESLGLWMEFLLSKNDAPHFQDQYQHLTDSFLMSNHLVTWKIQNGQASGTNALIDDMRIMLSLDQAAAKWGRSDYAQTARDIGTSLKTYNMNNGFFTDFYDSQAASKDVTLSYVMPDALAVLKKNGIIDEETEQRNANVLYSAPL--KNGFLPKTYSSETKEYTYDSEINLIDQLYAAWHLPEGDEKASVLADWIKQEFQKNGKLYGRYSAYTKEPAVQYESPSVYALAVLFLTKQHENSSVIKAIYDRMNDFEIHDPVKSYYGGYMS--GTQTHSFDNLLPLLAERKLFNENIIQ
3REN Chain:A ((20-349))-------------------------------------HMEEKMLFDFIEKDLSKSGYGIYTNYIDKSSEGDITKGHSVLSESEGLMMLYSVNANNKELFDEHFDIVKEMRL-KNGLISWRKEGDENSPSSATIDELRIIKALLLANNRWNSFYYKFYAINIANSLLKHAEENETLVDYIDNYGKGNTTTLCYLDLPTMKLLSQVDKKWEGIYEKSNSIIENGKISEEVPLYRKVFYEETQKYDEEENVDFLLSTIVILNRIEAGENEESSIKWIKEKFKKDGFLVATYNGKNGDATSQIESPSIYSNVALIANYI-GDKELFNKAIDKLKYYQIKNKDSVLYGGFGDEKTNSVYSFDNLNALLAFQKYK------


General information:
TITO was launched using:
RESULT:

Template: 3REN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1711 -113530 -66.35 -358.14
target 2D structure prediction score : 0.69
Monomeric hydrophicity matching model chain A : 0.69

3D Compatibility (PKB) : -66.35
2D Compatibility (Sec. Struct. Predict.) : 0.69
1D Compatibility (Hydrophobicity) : 0.69
QMean score : 0.481

(partial model without unconserved sides chains):
PDB file : Tito_3REN.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3REN-query.scw
PDB file : Tito_Scwrl_3REN.pdb: