Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMDSKLIFFDIDGTIYDHDKN-IPESTRKTVAELQRQGHHVFIASGRSPFLVKPILEELG----IHSFISYNGQFVVFENQVIYKNPLPENAIRRLLKQADEGKHPVVFMAEDTMKATVADHPHVLEGIGSLKTDYPETDDL----FYEG--KEIFQLLLFCQDEEEK-AYAAFPEFDLVRWHELSTDVLPHGGSKAEGIKKVIERLPFDIGDTYAFGDGLNDLQMIEYVGTGVAMGNAVPELKEIADFVTKPVDEDGIAYAVKELGLLK
2RAV Chain:A ((2-261))--TKALFFDIAGTLVSFETHRIPSSTIEALEAAHAKGLKIFIATGRPKAIINN-LSELQDRNLIDGYITMNGAYCFVGEEVIYKSAIPQEEVKAMAAFCEKKGVPCIFVEEHNISVC---QPN--EMVKKIFYDFLHVNVIPTVSFEEASNKEVIQMTPFITEEEEKEVLPSIPTCEIGRWYPAFADVTAKGDTKQKGIDEIIRHFGIKLEETMSFGDGGNDISMLRHAAIGVAMGQAKEDVKAAADYVTAPIDEDGISKAMKHFGII-


General information:
TITO was launched using:
RESULT:

Template: 2RAV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1535 -181542 -118.27 -732.02
target 2D structure prediction score : 0.60
Monomeric hydrophicity matching model chain A : 0.81

3D Compatibility (PKB) : -118.27
2D Compatibility (Sec. Struct. Predict.) : 0.60
1D Compatibility (Hydrophobicity) : 0.81
QMean score : 0.581

(partial model without unconserved sides chains):
PDB file : Tito_2RAV.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2RAV-query.scw
PDB file : Tito_Scwrl_2RAV.pdb: