Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAALPAPEKLLRSDFPVLWPVGTRWADNDMFGHLNNAVYYQLFDTAINAWINTSTGVDPLAMPVLGIVAESGCRYFSELRFPESLMVGLAVTRLGRSSVT--YRLGVFKEPDDAGVITALGHWVHVYVDRTSRRPVPIPEAIRSLLSTACVSG
3QY3 Chain:A ((37-156))
-----------------------RWGDMDSYGHVNNTLYFQYLEEARVAWFET-LGIDLEGAAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHTLEDPQGT---YGEGHCKLVWVRHAENRSTPVPDSIRAAIA------
General information:
TITO was launched using:
RESULT:
Template:
3QY3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70815 for 778 contacts (-91.0/contact) +
2D Compatibility (PS) -12836 + (NN) -6218 + (LL) 1940
1D Compatibility (HY) -6400 + (ID) 1950
Total energy: -96279.0 ( -123.75 by residue)
QMean score : 0.350
(partial model without unconserved sides chains):
PDB file :
Tito_3QY3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QY3-query.scw
PDB file :
Tito_Scwrl_3QY3.pdb
: