Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTVHSSIDQHPDLLALRASFDRAAESTIAHFTFGLALLAGLYVAASPWIVGFSATRGLPTCDLIVGIAVAYLAYGFASALDRTHGMTWTLPVLGVWVIFSPWVLPGVAVTAGMMWSHIIAGAVVAVLGFYFGMRTRAAANQG
2QKN Chain:A ((353-380))
----------------------------------------------------------------------------YAAFLDRVHGEEVALNKLGLWRVPHPWL---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2QKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6746 for 102 contacts (-66.1/contact) +
2D Compatibility (PS) -2560 + (NN) 1823 + (LL) 8996
1D Compatibility (HY) -2400 + (ID) 600
Total energy: -1487.0 ( -14.58 by residue)
QMean score : -0.092
(partial model without unconserved sides chains):
PDB file :
Tito_2QKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QKN-query.scw
PDB file :
Tito_Scwrl_2QKN.pdb
: