Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLTLSGWITTQVPPSSRAAADAKAARTGTAEQAEDPAAGTDAADQHVQ-----LSQAGRELAATMGVPVEEEDEDI----PQELRPMVKMIR-----ELKKKIEEKLRELQEAMRSSDPGAKEARVPELQKELQQLNSALQTATAAMASAIKEMGISDPALIMKVMGSR |
4PKV Chain:A ((15-87)) | --------------------------------------------QHYQHWSDSLSEEGRGLLKKLQIPIEPKKDDIIHSLSQEEKELLKRIQIDSSDFLSTEEKEFLKKLQIDIRDSLSEEEKELLNRIQVDSSNPLSEKEKEFLKKLKLDIQPYDINQRLQDTGGLID |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PKV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 642 for 239 contacts (2.7/contact) +
2D Compatibility (PS) -6639 + (NN) -3756 + (LL) 2540
1D Compatibility (HY) -4400 + (ID) 1150
Total energy: -12763.0 ( -53.40 by residue)
QMean score : 0.531
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