Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLRLIAVGSRMPRWVEEGWQEYVKRLPAELSLELVEIPLNTRGKNADVA-RLIRQEGEAMLARV-----------------QPGE----RVVTLEVEGRPWSTEQLARELDRWRLDARTVNLMVGGPEGLAPEVCARSEQRWSLSPLTLPHPLVRILVGEQIYRAWTVLSGHPYHK
3OFU Chain:A ((130-240))
------------PRGSCDFVSDFAEILPLNIFLTLIDVPLEDRPRLRQLGVQLTRPDGSMTVEQLKQAADDYLWPFIEKRMAQPGDDLFSRILSEPVGGRPWTVDE-ARRMCR--------NLLFGGLDTVA---------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3OFU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12088 for 442 contacts (-27.3/contact) +
2D Compatibility (PS) -9308 + (NN) -5249 + (LL) 5596
1D Compatibility (HY) -6400 + (ID) 1450
Total energy: -28899.0 ( -65.38 by residue)
QMean score : 0.260
(partial model without unconserved sides chains):
PDB file :
Tito_3OFU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OFU-query.scw
PDB file :
Tito_Scwrl_3OFU.pdb
: