Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTHGTAVCTRTYEKEA
2HMB Chain:A ((1-131))
-VDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTHGTAVCTRTYEKE-
General information:
TITO was launched using:
RESULT:
Template:
2HMB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26349 for 869 contacts (-30.3/contact) +
2D Compatibility (PS) -14693 + (NN) -3991 + (LL) 352
1D Compatibility (HY) -17600 + (ID) 6550
Total energy: -68831.0 ( -79.21 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_2HMB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HMB-query.scw
PDB file :
Tito_Scwrl_2HMB.pdb
: