Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL
1E96 Chain:A ((2-178))
-QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC-------------
General information:
TITO was launched using:
RESULT:
Template:
1E96.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136110 for 1446 contacts (-94.1/contact) +
2D Compatibility (PS) -19215 + (NN) -11455 + (LL) 792
1D Compatibility (HY) -24400 + (ID) 6300
Total energy: -196688.0 ( -136.02 by residue)
QMean score : 0.728
(partial model without unconserved sides chains):
PDB file :
Tito_1E96.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1E96-query.scw
PDB file :
Tito_Scwrl_1E96.pdb
: