Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPKKKSCLLL
4HDQ Chain:B ((1-167))
MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTE---AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR-----------------
General information:
TITO was launched using:
RESULT:
Template:
4HDQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102555 for 1327 contacts (-77.3/contact) +
2D Compatibility (PS) -17459 + (NN) -2066 + (LL) 1376
1D Compatibility (HY) -23600 + (ID) 8050
Total energy: -152354.0 ( -114.81 by residue)
QMean score : 0.715
(partial model without unconserved sides chains):
PDB file :
Tito_4HDQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HDQ-query.scw
PDB file :
Tito_Scwrl_4HDQ.pdb
: