Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREIRQYRLKKISKEEKTPGCVKIKKCIIM
4LYJ Chain:A ((3-168))
-TEYKLVVVGACGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETSLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK----------------------
General information:
TITO was launched using:
RESULT:
Template:
4LYJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100155 for 1344 contacts (-74.5/contact) +
2D Compatibility (PS) -18447 + (NN) -8592 + (LL) 2080
1D Compatibility (HY) -20800 + (ID) 7850
Total energy: -153764.0 ( -114.41 by residue)
QMean score : 0.547
(partial model without unconserved sides chains):
PDB file :
Tito_4LYJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LYJ-query.scw
PDB file :
Tito_Scwrl_4LYJ.pdb
: