Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPIPNNPGAGENAFDPVFVNDDDGYDLDSFMIPAHYKKYLTKVLVPNGVIKNRIEKLAYDIKKVYNNEEFHILCLLKGSRGFFTALLKHLSRIHNYSAVETSKPLFGEHYVRVKSYCNDQSTGTLEIVSEDLSCLKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACLFIKRTPLWNGFKADFVGFSIPDHFVVGYSLDYNEIFRDLDHCCLVNDEGKKKYKATSL
1QK5 Chain:A ((13-232))
-------GKGKGRIEPMYIPDNTFYNADDFLVPPHCKPYIDKILLPGGLVKDRVEKLAYDIHRTYFGEELHIICILKGSRGFFNLLIDYLATIQKYSGRESSVPPFFEHYVRLK-----------TVLSDDLSIFRDKHVLIVEDIVATGFTLTEFGERLKAVGPKSMRIATLVEKRT----SLKGDFVGFSIEDVWIVGCCYDFNEMFRDFDHVAVLSDAARKKFE----
General information:
TITO was launched using:
RESULT:
Template:
1QK5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -212758 for 1622 contacts (-131.2/contact) +
2D Compatibility (PS) -22043 + (NN) -7524 + (LL) 452
1D Compatibility (HY) -25600 + (ID) 5150
Total energy: -272623.0 ( -168.08 by residue)
QMean score : 0.661
(partial model without unconserved sides chains):
PDB file :
Tito_1QK5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QK5-query.scw
PDB file :
Tito_Scwrl_1QK5.pdb
: