Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VRSLNSIVAVCQNMGIGKDGNLPWPPLRNEYKYFQRMTSTSHVEGKQNAVIMGKKTWFSIPEKNRPLKDRINIVLSRELKEAPKGAHYLSKSLDDALALLDSPELKSKVDMVWIVGGTAVYKAAMEKPINHRLFVTRILHEFESDTFFPEIDYKDFKLLTEYPGVPADIQEEDGIQYKFEVYQKSVLAQ
1DHF Chain:A ((4-185))
---LNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEKN----
General information:
TITO was launched using:
RESULT:
Template:
1DHF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118794 for 1344 contacts (-88.4/contact) +
2D Compatibility (PS) -19897 + (NN) -9205 + (LL) 896
1D Compatibility (HY) -23600 + (ID) 6850
Total energy: -177450.0 ( -132.03 by residue)
QMean score : 0.783
(partial model without unconserved sides chains):
PDB file :
Tito_1DHF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DHF-query.scw
PDB file :
Tito_Scwrl_1DHF.pdb
: