Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQFRPLKGRINVVITR---NESLDLGNGIHSAKSLDHALELLYRTYGSESSVQINRIFVIGGAQLYKAAMDHPKLDRIMATIIY----KDIHCDVF--FPLKFRDKEWSSVWKKEKHSDLESWVGTKVPHGKINEDGFDYEFEMWTRDL
4H96 Chain:A ((6-188))
--------IVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNT---RNAVIMGRKTWESIPQKFRPLPDRLNIILSRSYENEIID-DNIIH-ASSIESSLNLVS---------DVERVFIIGGAEIYNELINNSLVSHLLITEIEHPSPESIEMDTFLKFPLE--------SWTKQPKSELQKFVGDTVLEDDIKEGDFTYNYTLWTR--
General information:
TITO was launched using:
RESULT:
Template:
4H96.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121265 for 1193 contacts (-101.6/contact) +
2D Compatibility (PS) -18885 + (NN) -3451 + (LL) 1796
1D Compatibility (HY) -18000 + (ID) 3700
Total energy: -163505.0 ( -137.05 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_4H96.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H96-query.scw
PDB file :
Tito_Scwrl_4H96.pdb
: