Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
3TC5 Chain:A ((10-166))
------LPPGWEKAMSRSSGRVYYFNHITNASQWERP-------------EPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
General information:
TITO was launched using:
RESULT:
Template:
3TC5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32035 for 1087 contacts (-29.5/contact) +
2D Compatibility (PS) -15524 + (NN) -9970 + (LL) -400
1D Compatibility (HY) -15600 + (ID) 7100
Total energy: -80629.0 ( -74.18 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_3TC5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TC5-query.scw
PDB file :
Tito_Scwrl_3TC5.pdb
: