Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADEIAKAQVARPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG
3TW2 Chain:A ((11-126))
----------ARPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG
General information:
TITO was launched using:
RESULT:
Template:
3TW2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74910 for 814 contacts (-92.0/contact) +
2D Compatibility (PS) -12772 + (NN) -10301 + (LL) 1248
1D Compatibility (HY) -16000 + (ID) 5800
Total energy: -118535.0 ( -145.62 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_3TW2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TW2-query.scw
PDB file :
Tito_Scwrl_3TW2.pdb
: