Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAAGRLFLSRLRAPFSSMAKSPLEGVSSSRGLHAGRGPRRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGTQKACTAQSLGNLLDMMYREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENGSLSDIEWHIYQDWHSFLLWEFASRITLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQEDLMREVNTFVKNL
2QRN Chain:A ((40-280))
------------------------------------RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQS----------NGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKD---KYESLVEKVKEFLSTL
General information:
TITO was launched using:
RESULT:
Template:
2QRN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128856 for 1752 contacts (-73.5/contact) +
2D Compatibility (PS) -23811 + (NN) -4151 + (LL) 3092
1D Compatibility (HY) -26800 + (ID) 6000
Total energy: -186526.0 ( -106.46 by residue)
QMean score : 0.381
(partial model without unconserved sides chains):
PDB file :
Tito_2QRN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QRN-query.scw
PDB file :
Tito_Scwrl_2QRN.pdb
: