Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTMKMAHAPPGHHSVIGRPSVNGLAYAEYVIYRGEQAYPEYLITYQIMKPEAPS
4LI8 Chain:A ((9-210))
APEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHA---GMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTIKMAHAPPGHHSVIGR-------YAEYVIYRGEQAYPEYLITYQIMKP----
General information:
TITO was launched using:
RESULT:
Template:
4LI8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68504 for 1521 contacts (-45.0/contact) +
2D Compatibility (PS) -21067 + (NN) -9419 + (LL) 296
1D Compatibility (HY) -25200 + (ID) 9550
Total energy: -133444.0 ( -87.73 by residue)
QMean score : 0.407
(partial model without unconserved sides chains):
PDB file :
Tito_4LI8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LI8-query.scw
PDB file :
Tito_Scwrl_4LI8.pdb
: