Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDVLSPGQGNNTTSPPAPFETGGNTTGISDVTVSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLVLPMAALYQVLNKWTLGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLIS-IPPMLGWRTPEDR------SDPDACTISKDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAA----------------RFRIRKTVKKVEKTGADTRHGASPAPQPKKSVNGESGSRN-------------WRLGVESKAGGAL-------------------CANGAVRQGDDGAA-----LEVIEVHRVGNSKEHLPLPSEAGPTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPFCESSCHMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFCRQ |
| 3NY9 Chain:A ((46-476)) | ----------------------------------------IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYKFCL-KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYI--LLNWIGYVNSGFNPLIYCR-SPDFRIAFQELLCL----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NY9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -176904 for 2642 contacts (-67.0/contact) +
2D Compatibility (PS) -37978 + (NN) -11736 + (LL) 1304
1D Compatibility (HY) -41600 + (ID) 6250
Total energy: -273164.0 ( -103.39 by residue)
QMean score : 0.263
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