Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MALNDCFLLNLEVDHFMHCNISSHSADLPVNDDWSHPGILYVIPAVYGVIILIGLIGNITLIKIFCTVKSMRNVPNLFISSLALGDLLLLITCAPVDASRYLADRWLFGRIGCKLIPFIQLTSVGVSVFTLTALSADRYKAI---VRPMDIQ--ASHALMKICLKAAFIWIISMLLAIPEAVFSDLHPFHEESTNQTFISCAPYPHSNELHPKIHSMASFLVFYVIPLSIISVYYYFIAKNLIQSAYNLPVEGNIHVKKQIESRKRLAKTVLVFVGLFAFCWLPNHVIYLYRSYHYSEVD------TSMLHFVTSICARLLAFTNSCVNPFALYLLSKSFRKQFNTQLLCCQPGLIIRSHSTGRSTTCMTSLKSTNPSVATFSLINGNICHERYV |
| 4RWA Chain:A ((125-406)) | ------------------------------------------ITALYSAVCAVGLLGNVLVMFGIVRYTKMKTATNIYIFNLALADALATSTL-PFQSAKYLMETWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINIC-----IWVLASGVGVPIMVMAVTRP-----RDGAVVCMLQFPSPSWYWDTVTKICVFLFAFVVPILIITVCY---GLMLL---------GS---KEKDRSLRRITRMVLVVVGAFVVCWAPIHIFVIV--WTLVDIDRRDPLVVAALHLCIA-----LGYANSSLNPVLYAFLDENFKRCF--RQLC--------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RWA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -204587 for 1981 contacts (-103.3/contact) +
2D Compatibility (PS) -26477 + (NN) -2871 + (LL) 7944
1D Compatibility (HY) -33600 + (ID) 4150
Total energy: -263741.0 ( -133.14 by residue)
QMean score : 0.267
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