Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVIMGQCYYNETIGFFYNNSGKELSSHWRPKDVVVVALGLTVSVLVLLTNLLVIAAIASNRRFHQPIYYLLGNLAAADLFAGVAYLFLMFHTGPRTARLSLEGWFLRQGLLDTSLTAS-VATLLAIAVERHRSVMAVQLHSRLPRG-RVVMLIVGVWVAALGLGLLP--------------AHSWHCLCALDRC--SRMAPLLSRSYLAVWALSSLLVFLLMVAVYTRIFFYVRRRVQRMAEHVSCHPRYRETTLSLV---KTVVIILGAFVVCWTPGQVVLLLDGLGCESCNVLAVEKYFL--LLAEANSLVNAAVYSCRDAEMRRTFRRLLCCACLRQSTRESVHYTSSAQGGASTRIMLPENGHPLMDSTL |
| 2YDO Chain:A ((8-311)) | ---------------------------------VYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGV--LAIPFAIAISTGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFA-CVLVPLLLMLGVYLRIFLAARRQLKQMES----------TLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFF-CPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFKAAAAENLYF-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -215620 for 2035 contacts (-106.0/contact) +
2D Compatibility (PS) -27864 + (NN) -14132 + (LL) 3688
1D Compatibility (HY) -27200 + (ID) 4400
Total energy: -285528.0 ( -140.31 by residue)
QMean score : 0.257
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