Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPSINDTHFYPPFFLLLGIPGLDTLHIWISFPFCIVYLIAIVGNMTILFVIKTEHSLHQPMFYFLAMLSMIDLGLSTSTIPKMLGIFWFNLQEISFG------GCLLQMFFIHMFTGMETVLLVVMAYDRFVAICNPLQYTMILTN-KTISILASVVVGRNLVLVTPFVFLILRLPFCGHNIVPHTYCEHRGLAGLAC---APIKINIIYGLMVISYIIVDVILIASSYVLILRAVFR---------LPSQDVR---LKAFNTCGSHVCVM----LCFYTPAFFSFMTHRFGQNIPH------YIHILLANLYVVVPPALNPVIYGVRTKQIREQIVKIFVQKE |
| 3VGA Chain:A ((16-302)) | -----------------------------------IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAI--------TISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTP----MLGWNNCGQ-------SQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTF-FCPDCSHAPLWLMYLAIVLSHTNSVV----NPFIYAYRIREFRQTFRKIIRSHV |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -256160 for 1815 contacts (-141.1/contact) +
2D Compatibility (PS) -24927 + (NN) -3665 + (LL) 3736
1D Compatibility (HY) -27600 + (ID) 3500
Total energy: -312116.0 ( -171.96 by residue)
QMean score : 0.254
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