Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MENYNQTSTDFILLGLFPPSRIDLFFFILIVFIFLMALIG---NLSMILLIFLDTHLHTPMYFLLSQLSLIDLNYISTIVPKMASDFLHGNKSISFTGCGIQSFFFLALGGAEALL-LASMAYDRYIAICFPLHYLIRMSKRVCVLMITGSWIIGSINACAHTVYVLHIPYCRSRAINHFFCDVPAMVTLAC-MDTWV-YEGTVFLSATIFL-----VFPFIGISCSYGQVLF-----AVYHMKSAEGRKK-------------AYLTCSTHLTVVTFYYAPFVYTYLRPRSLRSPTEDKVLAVFYTILTPMLNPIIYSLRNKEVMGALTRVSQRICSVKM |
3CAP Chain:A ((37-312)) | -------------------------FSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFF-ATLGGEIALWSLVVLAIERYVVVCKPMSNF-RFGENHAIMGVAFTWVMAL--ACAAPPLVGWSRY------------IPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIP-------AFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN--- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3CAP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -210654 for 1795 contacts (-117.4/contact) +
2D Compatibility (PS) -24903 + (NN) -1983 + (LL) 3544
1D Compatibility (HY) -21600 + (ID) 3600
Total energy: -259196.0 ( -144.40 by residue)
QMean score : 0.171
|
|
|