Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEPQNTTQVSMFVLLGFSQTQELQKFLFLLFLLVYVTTIVGNLLIMVTVTFDCRLHTPMYFLLRNLALIDLCYSTVTSPKMLVDFLHETKTISYQGCMAQIFFFHLLGGGTVFFLSVMAYDRYIAISQPLRYVTIMNTQLCVGLVVAAWVGGFVHSIVQLALILPLPFCGPNILDNFYCDVPQVLRLAC--TDTSLLEFLMISNSGLLVIIWFLLLLISYTVILVMLRSHSGKAR------RKAASTCTTHI-IVVSMIFIPCIYIYTW-P---------FTP-------FLMDKAVSISYTVMTPMLNPMIYTLRNQDMKAAMRRLGKCLVICRE |
3VGA Chain:A ((14-302)) | -------------------------------LAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFA---IGLTPMLGWNNCGQ-------SQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHT--NSVVNPFIYAYRIREFRQTFRKIIRSHVL--- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3VGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -247559 for 1908 contacts (-129.7/contact) +
2D Compatibility (PS) -25324 + (NN) -2133 + (LL) 4088
1D Compatibility (HY) -22800 + (ID) 3400
Total energy: -297128.0 ( -155.73 by residue)
QMean score : 0.339
|
|
|