Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSGENNSSVTEFILAGLSEQPELQLPLFLLFLGIYVVTVVGNLGMTTLIWLSSHLHTPMYYFLSSLSFIDFCHSTVITPKMLVNFVTEKNIISYPECMTQLYFFLVFAIAECHMLAAMAYDRYMAICSPLLYSVIISNKACFSLILGVYI----IGLV-------CASVHTGCMFRVQFCKFDLINHYFCDLLPLLKLSCSSIYVNKLLILCVGAFNILVPSLTILCSYIFI-IASILHIRSTEGR----SKAFSTCSSHMLA---VVIFFGSAAFMYLQPSSIS-------SMDQGKVSSVFYTIIV----PMLNPLIYSLRNKDVHVSLKKMLQRRTLL |
3VGA Chain:A ((14-308)) | -------------------------------LAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQ--------SQGCGEGQVACLFEDVVPMNYM----VYFN--FFACV-----LVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -243911 for 1826 contacts (-133.6/contact) +
2D Compatibility (PS) -24987 + (NN) 6393 + (LL) 3468
1D Compatibility (HY) -27200 + (ID) 3500
Total energy: -289737.0 ( -158.67 by residue)
QMean score : 0.330
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