Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNEPLDYLANASDFPDYAAAFGNCTDENIPLKMHYLPVIYGIIFLVGFPGNAVVISTYIFKMRPWKSSTIIMLNLACTDLLYLTSLPFLIHYYASGENWIFGDFMCKFIRFSFHFNLYSSILFLTCFSIFRYCVIIHPMSCFSIHKTRCAVVACAVVWIISLVAVIPMTFLITSTNRTNRSACLDLTSSDELNTIKWYNLILTAT---TFCLPLVIVTLCYTTIIHTLTHGLQTDSCLKQKAR------RLTILLLLAFYVCFLPFHILRVIRIESRLLSISCSIENQIHEAYIVSRPLAALNTFGNLLLYVVVSDNFQQAVCSTVRCKVSGNLEQAKKISYSNNP |
| 5C1M Chain:A ((23-294)) | --------------------------------------LYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPFQSVNYLMG-TWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATT---KYRQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRL-KSVRMLSGSKEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIK---ALITIPETTFQTVSWHFCIA--LGYTNSCLNPVLYAFLDENFKRCF------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 5C1M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -277854 for 1934 contacts (-143.7/contact) +
2D Compatibility (PS) -26244 + (NN) 695 + (LL) 3856
1D Compatibility (HY) -26400 + (ID) 3800
Total energy: -329747.0 ( -170.50 by residue)
QMean score : 0.254
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