Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MASSTTRGPRVSDLFSGLPPAVTTPANQSAEASAGNGSVAGADAPAVTPFQSLQLVHQLKGLIVLLYSVVVVVGLVGNCLLVLVIARVRRLHNVTNFLIGNLALSDVLMCTACVPLTLAYAFEPRGWVFGGGLCHLVFFLQPVTVYVSVFTLTTIAVDRYVVLVHPLRRR--ISLRLSAYAVLAIWALSAVLA-LPAAVHTY-HVE-LKPHDVRLCEEFWGSQERQRQLYAWGLLLVTYLLPLLVILLSYVRVSVKLRNRVVPGCVTQ--SQADWDRARRRRTFCL--------LVVIVVVFAVCWLPLHVFNLLRDLDPHAIDPYAFGLVQLLCHWLAMSSACYNPFIYAWLHDSFREELRKLLVAWPRKIAPHGQNMTVSVVI |
| 3SN6 Chain:R ((187-490)) | ----------------------------------------------------------------IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHIL-TKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYR-QEAINCYAEETCCDFFTNQA-----YAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGR--------------CLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVY----ILLNWIGYVNSGFNPLIYCRSPD-FRIAFQELLC------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SN6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -270654 for 1931 contacts (-140.2/contact) +
2D Compatibility (PS) -26629 + (NN) -9651 + (LL) 6644
1D Compatibility (HY) -30400 + (ID) 3850
Total energy: -334540.0 ( -173.25 by residue)
QMean score : 0.292
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