Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNSTCIEEQHDLDHYLFPIVYIFVIIVSIPANIGSLCVSFLQAKKESELGIYLFSLSLSDLLYALTLPLWIDYTWNKDNWTFSPALCKGSAFLMYMNFYSSTAFLTCIAVDRYLAVVYPLKFFFLRTRRFALMVSLSIWILETIFNAVMLWEDETVVEYCDAEKSNFTLCYDKYPLEKWQINLNLFRTCT---GYAIPLVTILICNRKV---YQAVRHNKATENKEK--KRIIKLLVSITVTFVLCFTPFHVMLLIRCILE-HAVNFEDHSNSGKRTYTMYRITVALTSLNCVADPILYCFVTETGRYDMWNILKFCTGRCNTSQRQRKRILSVSTKDTMELEVLE |
5C1M Chain:A ((23-290)) | -------------------LYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPFQ-SVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATT--KYRQGSI-DCTLTFS-HPTWYWE---NLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRMLSGSKEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVS---------WHFCIALGYTNSCLNPVLYAFLDENFKRCF------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 5C1M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -177826 for 1879 contacts (-94.6/contact) +
2D Compatibility (PS) -26088 + (NN) -3528 + (LL) 4840
1D Compatibility (HY) -27600 + (ID) 3700
Total energy: -233902.0 ( -124.48 by residue)
QMean score : 0.232
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