Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MATALPPRLQPVRGNETLREHYQYVGKLAGRLKEASEGSTLTTVLFLVICSFIVLENLMVLIAIWKNNKFHNRMYFFIGNLALCDLLAGIAYKVNILMSGKKTFSLSPTVWFLR--EGSMFVA------LGASTCSLLAIAIERHLTM-IKMRPYDANKRHRVFLLIGMCWLIAFTLGALPILGWN--------------CLHNLPDC--STILPLYSKKYIAFCISIFTAILVTIVIL---YARIYFLVKSSSRKVANHNNSERSMALL-------RTVVIVVSVFIACWSPLFILFLIDVACRVQACPILFKAQ-WFIVLAVL----NSAMNPVIYTLASKEMRRAFFRLVCNCLVRGRGARASPIQPALDPSRSKSSSSNNSSHSPKVKEDLPHTAPSSCIMDKNAALQNGIFCN |
| 2YDV Chain:A ((5-303)) | -------------------------------------GSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVL---------AIPFAIAISTGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNF----FACVLVPLLLMLGVYLRIFLAARRQLKQMESQ-------STLQKEVHAAKSLAIIVGLFALCWLPLHI-----INCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFKAAAAENLYFQ------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -208380 for 1806 contacts (-115.4/contact) +
2D Compatibility (PS) -25788 + (NN) -12266 + (LL) 5224
1D Compatibility (HY) -28000 + (ID) 3950
Total energy: -273160.0 ( -151.25 by residue)
QMean score : 0.250
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