Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTVLAPAWSPTTYLLLLLLLSSGLSGTQDCSFQHSPISSDFAVKIRELSDYLLQDYPVTVASNLQDEELCGGLWRLVLAQRWMERLKTVAGSKMQGLLERVNTEIHFVTKCAFQPPPSCLRFVQTNISRLLQETSEQLVALKPWITRQNFSRCLELQCQPDSSTLPPPWSPRPLEATAPTAPQPPLLLLLLLPVGLLLLAAAWCLHWQRTRRRTPRPGEQVPPVPSPQDLLLVEH |
2L9U Chain:A ((637-676)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGRTHLTMALTVIAGLVVIFMMLGGTF-LYWRGRRHHHHHH------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2L9U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -7657 for 154 contacts (-49.7/contact) +
2D Compatibility (PS) -4407 + (NN) -4615 + (LL) 13324
1D Compatibility (HY) -3600 + (ID) 400
Total energy: -7355.0 ( -47.76 by residue)
QMean score : 0.133
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