Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------------ISCSTVYST--LMPCLQYVQQGGSP----------------------ARGCCTGIQNLLAEANNSPDRRTICGCLKNVA-NGASGGPYITRADALPSKCNVALPYKISPSVDCNSNH
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCG------VRCMRQTRTN-
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22456 for 624 contacts (-36.0/contact) +
2D Compatibility (PS) -8160 + (NN) 4845 + (LL) 572
1D Compatibility (HY) -1200 + (ID) 750
Total energy: -27149.0 ( -43.51 by residue)
QMean score : 0.277
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: