Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------LTPCEEATN--LLTPCLRYLW----------------APPEAKPSPECCSGLDKVNKGVKTYDDRHDMCICLSSEAAITSADQYKF----DNLPKLCNVALFAP---VGPKFDCSTIKV
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDVSGGRCS----
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35223 for 541 contacts (-65.1/contact) +
2D Compatibility (PS) -9018 + (NN) -40 + (LL) 512
1D Compatibility (HY) -800 + (ID) 750
Total energy: -45319.0 ( -83.77 by residue)
QMean score : 0.301
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: