Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----DLRKGCYDLGI--TVLMGCPDSIDKKLPAPPTPS---------EGCCTLVRTIGMKCVCEIVNKKIEDTIDMQKLVNVAAACGRPLAP----GSQCGSYRVPGA
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMSQPCQM------
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45374 for 540 contacts (-84.0/contact) +
2D Compatibility (PS) -8225 + (NN) -218 + (LL) 216
1D Compatibility (HY) -3600 + (ID) 750
Total energy: -57951.0 ( -107.32 by residue)
QMean score : 0.342
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: