Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----ASPTCDTVQNIL-----APCAGFLTGQ----EPSKACCTGVNNLNNSRKTKADRVAVC--NCIKELTKSIAYDPKRMPLLSTKCGVKP----DFPAVDKNLDCSKLPV
1YOZ Chain:A ((9-124))
GHMLYINSFLDRMGEIIRGEKSVEEADKLLDQKNIFEMFRSDCEEILNLYKSGKAEKEEVQRNFYLLKTYVVSQLSIHFERLKEFAESKGEKKLDPEVINEIALYIDRVEKEV
General information:
TITO was launched using:
RESULT:
Template:
1YOZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8246 for 597 contacts (-13.8/contact) +
2D Compatibility (PS) -9209 + (NN) -32 + (LL) 0
1D Compatibility (HY) -3200 + (ID) 850
Total energy: -21537.0 ( -36.08 by residue)
QMean score : 0.242
(partial model without unconserved sides chains):
PDB file :
Tito_1YOZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YOZ-query.scw
PDB file :
Tito_Scwrl_1YOZ.pdb
: