Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------LTCGQVAGD---LAACLPYLQ--------------GSGPLGSCCGGVRALLGAAKTPADRKTACTCLKSAANAI-----KGINLSKAAGLPTACGVNIPYKISPSTDCSTVQ
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL--------DEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM-------SQPCQM--
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35702 for 492 contacts (-72.6/contact) +
2D Compatibility (PS) -7209 + (NN) -117 + (LL) 980
1D Compatibility (HY) -3600 + (ID) 1000
Total energy: -46648.0 ( -94.81 by residue)
QMean score : 0.281
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: