Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LTCDDVNNNLISCLSYVAGGGKVPTSCCSGVKNLLSLAKTR-NDRQTACSCLKSLAVEANNDQLKRAQTVPKSCSLTIPFPISR-D------VDCSKVK
2NQW Chain:A ((7-93))
LPFKVLGDG-----SYLFEG----KTSLSDVRHYLDLPENAFGELGDEVDTLSGLFLEIKQELPHVGDTAVYE---PFRFQVTQMDKRRIIEIKIFPFE
General information:
TITO was launched using:
RESULT:
Template:
2NQW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27022 for 523 contacts (-51.7/contact) +
2D Compatibility (PS) -8546 + (NN) -1344 + (LL) 732
1D Compatibility (HY) -6400 + (ID) 700
Total energy: -43280.0 ( -82.75 by residue)
QMean score : 0.316
(partial model without unconserved sides chains):
PDB file :
Tito_2NQW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NQW-query.scw
PDB file :
Tito_Scwrl_2NQW.pdb
: