Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ITCGQVASSISPCVNYVKSGG--AVPAACCNGIRSLNSAAKTTADRQATCNCLKQA-SGAIKGLNPSLAAGLPGKCGVSVPYKISTSTNCAAVK
2RKN Chain:A ((4-75))
-LCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--------DFACLCGYKNSPWLGS-FGVDPELASALPKQCGLANAP------------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27922 for 459 contacts (-60.8/contact) +
2D Compatibility (PS) -7267 + (NN) -830 + (LL) 1736
1D Compatibility (HY) -2400 + (ID) 850
Total energy: -37533.0 ( -81.77 by residue)
QMean score : 0.317
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: