Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------------AITCQQVTVAVTPCIGYARTGGT-----------------MPPDCCNGVRNLNSAAKNTPDRQQACICLKQMSSIPGINMSIVSEIPAKCNVNIGYPIAMSTDCSKVK
2L1N Chain:A ((1-120))
MGITITDELLWAILKDELSDAEANALVWQALGYVWDEAQSCWKTDLVAPEWRQDYPEPPDFIASRPATVKLTRSIPAPYKQ--LLKEELGFAGYSINELVPRKTRRATMTNWLLAYRRSQQD--
General information:
TITO was launched using:
RESULT:
Template:
2L1N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25851 for 511 contacts (-50.6/contact) +
2D Compatibility (PS) -8872 + (NN) -2262 + (LL) 516
1D Compatibility (HY) -400 + (ID) 550
Total energy: -37419.0 ( -73.23 by residue)
QMean score : 0.219
(partial model without unconserved sides chains):
PDB file :
Tito_2L1N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2L1N-query.scw
PDB file :
Tito_Scwrl_2L1N.pdb
: