Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------ITCGQVS--SNLVPCFDYVRS----------------GGPVPPACCNGIRTINGLAKTTPDRQAAC------NCLKSLAGSVSGVNPGNVESLPGKCGVNVPYKISTSTNCATVK--
3Q87 Chain:A ((1-125))
MKPFLLGLLKCKRCSFMTKLILECEKAESNDVDVKIFNKHMFTENGGERLKSLVNSLRDFHGRELSEQDISSFVENPGDDEKIKEFLFGID-VVEGSLRC--DMCGLIYPIKGSIVETVDTVESK
General information:
TITO was launched using:
RESULT:
Template:
3Q87.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17153 for 554 contacts (-31.0/contact) +
2D Compatibility (PS) -9158 + (NN) 1898 + (LL) -136
1D Compatibility (HY) -6000 + (ID) 1000
Total energy: -31549.0 ( -56.95 by residue)
QMean score : 0.324
(partial model without unconserved sides chains):
PDB file :
Tito_3Q87.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q87-query.scw
PDB file :
Tito_Scwrl_3Q87.pdb
: