Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AIGCGTVVSYLNPCLPYVTNKG-PLGSCCGGVKGLYGAAQTAQDRQSVCSCLKSLAGSYKDVDLNKAAGLPGQCGVNIPYKISPSTDCSKVN
1L6H Chain:A ((1-69))
-AGC--NAGQLTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNS----------PNARKAVSSCGIALPT-------CH---
General information:
TITO was launched using:
RESULT:
Template:
1L6H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47706 for 518 contacts (-92.1/contact) +
2D Compatibility (PS) -6884 + (NN) -2319 + (LL) 740
1D Compatibility (HY) -800 + (ID) 700
Total energy: -57669.0 ( -111.33 by residue)
QMean score : 0.216
(partial model without unconserved sides chains):
PDB file :
Tito_1L6H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L6H-query.scw
PDB file :
Tito_Scwrl_1L6H.pdb
: