Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTCNPTELSSCVPAITGGSKPSSTCCSKLKV-----------QEPCLCNYIKNPSLKQYVNSPGAKKVLSNCGVTYPNC
1SIY Chain:A ((7-78))
----QGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR-GINPNNAEALPGKCGVNIP--
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13457 for 395 contacts (-34.1/contact) +
2D Compatibility (PS) -6111 + (NN) -1479 + (LL) 316
1D Compatibility (HY) -3600 + (ID) 700
Total energy: -25031.0 ( -63.37 by residue)
QMean score : 0.310
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: