Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------------------SVDCTTLVLSMADCLSFVSNDS-----TSKKPEGTCCSGLKTVLGTDAECLCEAFKSSAQ---------FGVVLNVTKALALPSACKIKAPPASNCG---------
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEM-ENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNF--RAPQRCDLDVSGGRCS
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27471 for 497 contacts (-55.3/contact) +
2D Compatibility (PS) -8289 + (NN) -2820 + (LL) 384
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -41296.0 ( -83.09 by residue)
QMean score : 0.423
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: