Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------QCGGSFVDIE--AQCSQFVHKTGPKTPPS----------LGCCQVVKTLNVNCVCRFVTP-------QVEAMISMEKVVYVARTCGVTVRAGTQCGKFKFLAMPIFQG
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM---SQPCQM-----------
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40352 for 453 contacts (-89.1/contact) +
2D Compatibility (PS) -7419 + (NN) -1639 + (LL) 1436
1D Compatibility (HY) -2400 + (ID) 650
Total energy: -51024.0 ( -112.64 by residue)
QMean score : 0.250
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: